Quinoa, Apple & Spinach Stuffed Honeynut Squash (A Vegetarian Bombshell!)

These quinoa, apple and spinach stuffed honeynut squash are topped with a melted layer of cheese and are completely irresistible. They're a stunning vegetarian side dish or a delicious main course.

Quinoa and apple stuffed honeynut squash on a serving platter.

Stuffed honeynut squash recipe

Honeynut squash first appeared at our market a few years ago, and I've been smitten ever since. In this recipe, they're roasted until tender, then are stuffed with a cinnamon-spiked quinoa, apple and spinach stuffing. A layer of oozy melted cheese takes them over the top.The stuffed honeynut squash make for a gorgeous vegetarian side dish (or main course) on a holiday table, but are easy enough for any average Wednesday.

Close up of a stuffed honeynut squash on a baking sheet.

What is honeynut squash?

A honeynut squash looks like a minuscule butternut, but it has a richer, sweeter flesh. It's absolutely delicious and is worth seeking out, but if you can't find it you can use acorn squash in this recipe instead.

Process shot for the honeynut squash recipe showing roasted squash halves on a baking sheet with the quinoa stuffing and cheese alongside.

Stuffed squash filling

The quinoa filling was loosely inspired by my favorite stuffing recipe, which features onions, celery, apples, rosemary and thyme as the base. I also added a pinch of cinnamon to provide sweetness and warmth, as well as spinach, quinoa and pecans for substance. The stuffing gets piled into the squash cavities, and is then sprinkled with nutty Comté cheese (or you could use Gruyere). After a brief stint in a hot oven, they emerge with a golden, melted cap.

Stuffed honeynut squashes on a baking sheet.

Can you use other squash varieties in this recipe?

Yes! You can swap out the honeynuts for acorn squashes. Since acorn squash isn't as sweet or rich as honeynut, I suggest adding a touch of butter and maple syrup to each squash half before stuffing.

Close up side view of a stuffed honeynut squash with melted cheese.

Vegan stuffed squash recipe

For a vegan version, swap out the butter for olive oil (or vegan butter) and use a vegan cheese.

Can you make the stuffed squash ahead?

Yes! The stuffed squash (without the cheese) can be refrigerated overnight. Before serving, sprinkle the squash with the cheese and bake until warmed through.

Overhead shot of a platter of stuffed honeynut squashes.

For another variation, try this Moroccan Lamb Stuffed Honeynut Squash Recipe (see below)!

Lamb stuffed honeynut squash on a baking sheet.

Tips for making this recipe:

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Other squash recipes you might like:

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Quinoa and apple stuffed honeynut squash on a serving platter.
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Quinoa, Apple & Spinach Stuffed Honeynut Squash

These vegetarian bombshells are a delicious main course or a stunning side dish! Honeynut squash halves are stuffed with a fragrant filling of quinoa, celery, apples, rosemary, thyme, spinach and pecans, and are capped with melted nutty Comté cheese. It’s the perfect dish for fall and winter and is a beautiful addition to the holiday table. Honeynut squashes look like mini butternuts but have a sweeter, richer flesh. If you can’t find them, you can use acorn squashes instead (if that’s the case, I like to add a touch of butter and maple syrup as noted in the recipe below, as the flesh isn’t quite as sweet as honeynuts). You’ll need cooked quinoa for this recipe (see note below), which can be made ahead. *For a vegan version, swap out the butter for olive oil and use a vegan cheese.
Servings: 4 -6 people
Prep Time: 20 minutes
Cook Time: 35 minutes
Total Time: 55 minutes

Ingredients

  • 4 small or 3 medium honeynut squashes or 2 acorn squashes, halved lengthwise, seeds scraped out and discarded
  • 2 tablespoons unsalted butter
  • ½ medium onion, finely diced
  • 1 celery stalk, finely diced
  • Salt and freshly ground black pepper
  • 1 large garlic clove, minced
  • ½ green apple, finely diced
  • 1 teaspoon finely chopped rosemary
  • 1 teaspoon finely chopped thyme
  • teaspoon cinnamon
  • 3 cups baby spinach
  • 2 cups cooked red quinoa, see notes below
  • ½ cup low sodium vegetable or chicken broth
  • 1 teaspoon apple cider vinegar
  • ¼ cup coarsely chopped toasted pecans
  • 1 cup shredded Comté cheese (or you could use Gruyere)

Instructions

  • Preheat the oven to 400˚F. Line a large baking sheet with parchment paper.
  • Place the squash halves, cut side down, on the baking sheet. Roast until tender, 25-30 minutes for honeynut squash, or 40-50 minutes for acorn squash. Remove the pan from the oven and flip each squash over so that the cut side is facing up. Set aside (if there’s a lot of liquid on the pan, transfer the squash halves to a clean parchment-lined pan). Increase the oven temperature to 550˚F.
  • While the squash bakes, make the filling. In a large skillet, melt the butter over medium heat. Add the onion and celery, and season with salt and pepper. Cook, stirring occasionally, until the vegetables start to soften, about 3 minutes. Add the garlic, apple, rosemary, thyme and cinnamon. Cook, stirring, until the vegetables and apples are tender, about 2-3 minutes longer. Pile in the spinach, and cook, stirring, until wilted.
  • Stir in the quinoa, and season with salt and pepper. Pour in the broth and cook, stirring, until mostly absorbed. Remove the skillet from the heat and add the apple cider vinegar and pecans. Season with more salt and pepper as needed.
  • Season the squash halves with salt and pepper (if using acorn squash, I like to dot the top of the squash with a few small pieces of butter and drizzle them with a little maple syrup, as acorn squash isn’t quite as rich and sweet as honeynut). Scoop the filling into each squash cavity (an ice cream scoop works great for this), mounding it firmly. Pile the cheese over the filling.
  • Roast the stuffed squash in the 550˚F oven until the cheese is lightly toasted, about 4-6 minutes.

Notes

Do Ahead:
  • The squash can be roasted up to 8 hours in advance. Leave it at room temperature.
  • The stuffed squash without the cheese can sit at room temperature for up to 2 hours or can be refrigerated for up to 1 day (bring to room temperature before proceeding). Add the cheese before baking.
Tips:
  • You’ll need to start with ¾ cup of dry quinoa to yield at least 2 cups of cooked quinoa. Rinse the quinoa well, then place it in a small saucepan with 1 ½ cups of water and a pinch of salt. Bring the water to a boil, then reduce the heat to a simmer. Cover and cook 15 minutes, or until the water is absorbed. Remove the pot from the heat and let sit 10 minutes, covered, to steam. Fluff the quinoa with a fork. Measure out 2 cups for the recipe (you’ll have leftover quinoa, which you can toss is salads or use in grain bowls).
  • A grapefruit spoon is a great tool for scraping out the seeds of winter squashes!
  • Roasting the squash on parchment paper prevents sticking (I love these pre-cut sheets). You can use aluminum foil, but be sure to spray it with cooking spray or brush it with oil.
  • Don't miss these Moroccan Lamb Stuffed Honeynut Squashes!
    Loved this recipe? Check out @nickisizemore for more!
    Course: Side Dish
    Cuisine: American
    Keyword: healthy honeynut squash recipe, honeynut squash recipe, stuffed honeynut squash

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    2 Comments

    1. 5 stars
      What a fabulous recipe! I had 2 honey nuts from the CSA I needed to roast. I supplemented with another lovely hybrid squash (kula nut??) that was about the size of an acorn squash. The filling was perfection. I made it with olive oil and didn’t use the cheese on all to serve for my non-dairy eating hubby. Rave reports all around. This will go into fall rotation. Thanks for the great recipe and tips!